PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000275252
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 272aa    MW: 30456 Da    PI: 8.6678
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000275252genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.45.5e-20194227134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  MDP0000275252 194 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 227
                    *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.571188224IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-16188238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-15191251No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14192225IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.54E-16193240No hitNo description
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
PfamPF003209.1E-18194227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTAVSADVTK LTKRERPNRV LRELGIRACA VNISDMDGSL PTDGAFNYES FLGNDILSAL  60
DFPMEDIDDS VEDNDWDXKF QDIEPPPNID QLLGPGIFSY DDKKKHTNLS TPRTRSKLSR  120
SRRANPVTFS TQFIPSTSSN SSATENLYHW DACKFDIESS RTEDMLNTTK RKQKKKTGKL  180
TTDEPGESRE AKRCTHCQVT KTPQWREGPL GPKTLCNACG VRYRSGRLFP EYRPAASPTF  240
VAAVHSNSHK KVIELRSKGC QEAVMGILSS AR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.7451e-150bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359133.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLM5VZX12e-98M5VZX1_PRUPE; Uncharacterized protein
STRINGPOPTR_0004s22140.13e-42(Populus trichocarpa)
STRINGGLYMA12G29730.18e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein